Package: polymapR
Type: Package
Title: Linkage Analysis in Outcrossing Polyploids
Version: 1.1.7
Date: 2025-10-17
Authors@R: c(person("Peter","Bourke", email = "pbourkey@gmail.com", role = c("aut","cre")),
             person("Geert","van Geest", role = "aut"),
             person("Roeland","Voorrips", role = "ctb"),
             person("Yanlin","Liao", role = "ctb"))
Description: Creation of linkage maps in polyploid species from marker
        dosage scores of an F1 cross from two heterozygous parents.
        Currently works for outcrossing diploid, autotriploid,
        autotetraploid and autohexaploid species, as well as segmental
        allotetraploids. Methods are described in a manuscript of
        Bourke et al. (2018) <doi:10.1093/bioinformatics/bty371>. Since
        version 1.1.0, both discrete and probabilistic genotypes are
        acceptable input; for more details on the latter see Liao et
        al. (2021) <doi:10.1007/s00122-021-03834-x>.
Depends: R (>= 3.5.0)
License: GPL
Imports: doParallel, foreach, graphics, grDevices, igraph, knitr,
        MDSMap, stats, utils
RoxygenNote: 7.3.1
Suggests: ggplot2, Hmisc, RColorBrewer, reshape2, rmarkdown, polyRAD,
        updog, mappoly
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: TRUE
NeedsCompilation: no
Packaged: 2026-06-14 09:00:17 UTC; root
Author: Peter Bourke [aut, cre], Geert van Geest [aut], Roeland
        Voorrips [ctb], Yanlin Liao [ctb]
Maintainer: Peter Bourke <pbourkey@gmail.com>
Config/pak/sysreqs: cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev
        make texlive libicu-dev libpng-dev libuv1-dev libxml2-dev
        libgl1-mesa-dev libx11-dev zlib1g-dev
Repository: https://pbourkey.r-universe.dev
Date/Publication: 2025-10-17 16:40:02 UTC
RemoteUrl: https://github.com/cran/polymapR
RemoteRef: HEAD
RemoteSha: 2d18f9eac3da5c41765974f4d11a1445d147c701