Package: polyqtlR
Type: Package
Title: QTL Analysis in Autopolyploid Bi-Parental F1 Populations
Version: 0.1.1
Date: 2024-01-08
Authors@R: c(person("Peter","Bourke", email = "pbourkey@gmail.com", role = c("aut","cre")),
          person("Christine","Hackett", role = "ctb"),
             person("Chris","Maliepaard", role = "ctb"),
             person("Geert","van Geest", role = "ctb"),
             person("Roeland","Voorrips", role = "ctb"),
             person("Johan","Willemsen", role = "ctb"))
Maintainer: Peter Bourke <pbourkey@gmail.com>
Description: Quantitative trait loci (QTL) analysis and exploration of
        meiotic patterns in autopolyploid bi-parental F1 populations.
        For all ploidy levels, identity-by-descent (IBD) probabilities
        can be estimated. Significance thresholds, exploring QTL allele
        effects and visualising results are provided. For more
        background and to reference the package see
        <doi:10.1093/bioinformatics/btab574>.
Depends: R (>= 3.5.0)
Imports: abind, doParallel, foreach, grDevices, graphics, Hmisc, knitr,
        nlme, RColorBrewer, Rcpp (>= 0.12.19), reshape2, stats, utils
Suggests: igraph, mappoly (>= 0.3.0), polymapR, rmarkdown
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2026-06-21 08:35:44 UTC; root
Author: Peter Bourke [aut, cre], Christine Hackett [ctb], Chris
        Maliepaard [ctb], Geert van Geest [ctb], Roeland Voorrips
        [ctb], Johan Willemsen [ctb]
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://pbourkey.r-universe.dev
Date/Publication: 2024-01-10 02:44:48 UTC
RemoteUrl: https://github.com/cran/polyqtlR
RemoteRef: HEAD
RemoteSha: a7317b59cc70fbffbb2f48077b390529c651866a