1. polymapR::ALL_dosages
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|3000 x 209
  2. polymapR::LGHomDf_P1_1
    A 'data.frame' specifying the assigned homologue and linkage group number per SxN marker
    csv| xlsx| json| ndjson| rda| rds
    data.frame|172 x 3
  3. polymapR::LGHomDf_P2_1
    A 'data.frame' specifying the assigned homologue and linkage group number per SxN marker
    csv| xlsx| json| ndjson| rda| rds
    data.frame|195 x 3
  4. polymapR::LGHomDf_P2_2
    A 'data.frame' specifying the assigned homologue and linkage group number per SxN marker
    csv| xlsx| json| ndjson| rda| rds
    data.frame|195 x 3
  5. polymapR::P1_DxN_Assigned
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|111 x 14
  6. polymapR::P1_SxS_Assigned
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|297 x 14
  7. polymapR::P1_homologues
    A list of cluster stacks at different LOD scores
    json| rda| rds
    list
  8. polymapR::P2_DxN_Assigned
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|101 x 14
  9. polymapR::P2_SxS_Assigned
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|301 x 14
  10. polymapR::P2_SxS_Assigned_2
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|301 x 14
  11. polymapR::P2_homologues
    A list of cluster stacks at different LOD scores
    json| rda| rds
    list
  12. polymapR::P2_homologues_triploid
    A list of cluster stacks at different LOD scores
    json| rda| rds
    list
  13. polymapR::SN_DN_P1
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|19536 x 5
  14. polymapR::SN_DN_P2
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|19897 x 5
  15. polymapR::SN_SN_P1
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|15400 x 5
  16. polymapR::SN_SN_P2
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|19306 x 5
  17. polymapR::SN_SN_P2_triploid
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6655 x 5
  18. polymapR::SN_SS_P1
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|53152 x 5
  19. polymapR::SN_SS_P2
    A linkage 'data.frame'.
    csv| xlsx| json| ndjson| rda| rds
    linkage_df|59494 x 5
  20. polymapR::TRI_dosages
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|250 x 202
  21. polymapR::all_linkages_list_P1
    A (nested) list of linkage data frames classified per linkage group and homologue
    json| rda| rds
    list
  22. polymapR::all_linkages_list_P1_split
    A (nested) list of linkage data frames classified per linkage group and homologue
    json| rda| rds
    list
  23. polymapR::all_linkages_list_P1_subset
    A (nested) list of linkage data frames classified per linkage group and homologue
    json| rda| rds
    list
  24. polymapR::chk1
    Example output of the checkF1 function
    json| rda| rds
    list
  25. polymapR::exampleRAD_mapping
    Example output dataset of polyRAD::PipelineMapping2Parents function
    rda| rds
    RADdata
  26. polymapR::gp_df
    An example of a genotype probability data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10800 x 12
  27. polymapR::gp_vignette_data
    A list of objects needed to build the probabilistic genotype vignette
    json| rda| rds
    list
  28. polymapR::integrated.maplist
    A nested list with integrated maps
    json| rda| rds
    list
  29. polymapR::map1
    A sample map
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2
  30. polymapR::map2
    A sample map
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2
  31. polymapR::map3
    A sample map
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 2
  32. polymapR::maplist_P1
    A list of maps of one parent
    json| rda| rds
    list
  33. polymapR::maplist_P1_subset
    A list of maps of one parent
    json| rda| rds
    list
  34. polymapR::maplist_P2_subset
    A list of maps of one parent
    json| rda| rds
    list
  35. polymapR::marker_assignments_P1
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|1094 x 16
  36. polymapR::marker_assignments_P2
    A 'data.frame' with marker assignments
    csv| json| rda| rds
    matrix|1127 x 16
  37. polymapR::mout
    Example output dataset of updog::multidog function
    rda| rds
    multidog
  38. polymapR::phased.maplist
    A list of phased maps
    json| rda| rds
    list
  39. polymapR::screened_data
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|1417 x 209
  40. polymapR::screened_data2
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|1417 x 207
  41. polymapR::screened_data3
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|1417 x 200
  42. polymapR::segregating_data
    A dosage matrix for a random pairing tetraploid with five linkage groups.
    csv| json| rda| rds
    matrix|2873 x 209
  43. polyqtlR::BLUEs.pheno
    Best Linear Unbiased Estimates of phenotype
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 2
  44. polyqtlR::GIC_4x
    Genotypic Information Coefficient for example tetraploid
    json| rda| rds
    list
  45. polyqtlR::IBD_4x
    Identical by descent probabilities for example tetraploid
    json| rda| rds
    list
  46. polyqtlR::Phenotypes_4x
    Phenotypes for example tetraploid
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 3
  47. polyqtlR::Rec_Data_4x
    Recombination data for example tetraploid
    json| rda| rds
    list
  48. polyqtlR::SNP_dosages.4x
    SNP marker dosage data for example tetraploid
    csv| json| rda| rds
    matrix|186 x 52
  49. polyqtlR::mr.ls
    Example output of meiosis report function
    csv| json| rda| rds
    list
  50. polyqtlR::phased_maplist.4x
    Phased maplist for example tetraploid
    csv| json| rda| rds
    list
  51. polyqtlR::qtl_LODs.4x
    QTL output for example tetraploid
    json| rda| rds
    list
  52. polyqtlR::segList_2x
    Expected segregation for all markers types of a diploid cross
    csv| json| rda| rds
    list
  53. polyqtlR::segList_3x
    Expected segregation for all markers types of a triploid cross (4 x 2)
    csv| json| rda| rds
    list
  54. polyqtlR::segList_3x_24
    Expected segregation for all markers types of a triploid cross (2 x 4)
    csv| json| rda| rds
    list
  55. polyqtlR::segList_4x
    Expected segregation for all markers types of a tetraploid cross
    json| rda| rds
    list
  56. polyqtlR::segList_6x
    Expected segregation for all markers types of a hexaploid cross
    json| rda| rds
    list